Hi Will!
First off, the low pressure side is after the throttle plate. That is the line that needs be capped. Cap on both sides for max effect, leaving the other line alone.
As to the 'second groove', I suggest you use one groove, as instructed, until you've completed the process. Test that, then cut the other. This goes on the entry side, and is usually more difficult to do considering the depth of the TB.
Let me know how it goes!